Workshops
Check our Workshops
Workshop 1
Date: Tuesday 3 October, 2023
Location: LF9 at South Academic Block, Southampton General Hospital
Agenda
| Time |
Topic |
Speaker |
Slides |
| 14:00 - 14:15 |
Imaging in dementia, synergies and directions |
Angela Darekar |
|
| 14:15 - 14:30 |
Aims, datasets available, survey results |
Chris Kipps Sofia Michopoulou |
|
| 14:30 - 15:00 |
Break into groups:
- Multimodal Integration using AI
- Processing Pipelines
- Disease Trajectories
|
|
|
| 15:00-15:30 |
Regroup and Present Projects (5 minutes presentation and 5 minutes discussion each) |
| 15:30-16:00 |
Summarise and Close: Focus on things that add value, Plan next steps for group/subgroups |
|
|
Actions
- Develop a survey to identify brain imaging datasets at Southampton.
- Develop a website for the single voxel group image processing stream.
Workshop 2
Date: Friday 12 January, 2024
Location: LE30 (Level E), Southampton General Hospital [Directions]
In this workshop, we will present the results of the survey and discuss the available datasets. We will continue developing our workstreams, informed by a review of the available datasets, and options on data storage and sharing with short talks on XNAT and the Secure Data Environment.
Agenda
| Time |
Topic |
Speaker |
Slides |
| 10:30 – 10:45 |
Recap of last meeting, presentation of imaging datasets |
Chris Kipps Sofia Michopoulou |
|
| 10:45 – 11:00 |
XNAT Presentation |
Katja Zilonova |
|
| 11:00 – 11:15 |
Secure Data Environment Presentation |
Chris Kipps |
|
| 11:15 – 11:45 |
Break out into workstreams, project development |
All |
|
| 11:45 – 12:15 |
Regroup and discuss synergies between groups, planning for project delivery and funding |
All |
| 12:15 – 12:30 |
Wrap up, plans for next meeting, presentation of website |
Chris Kipps Sofia Michopoulou |
|
Actions
- Invite members to the Teams channel that already estbalished on the UoS side.
- Finalise database of datasets and share on the Teams channel.
- Collate photos and bios and upload to website, also add iDEAC banner.
- Discuss access to biobank data.
Workshop 3
Date: Tuesday 4 June, 2024
Location: LE30 (Level E), Southampton General Hospital [Directions]
In this workshop, inspired from the lightning talks at the IDeAC network event
on 16 May 2024, we will do short introductions (3-5 minute presentations, with or without slides)
of our work / area of interest. We would use the lightning talks to do a mapping of interests,
with the aim to identify areas for further collaboration and future funding applications.
Agenda
| Time |
Topic |
Speaker |
| 14:00 – 14:15 |
Recap |
Sofia Michopoulou |
| 14:15 – 14:35 |
ReproNim |
Yukai Zou |
|
| 14:35 – 14:55 |
Multi-modality and multi-resolution topological image analysis |
Ruben Sanchez-Garcia |
| 14:55 – 16:00 |
Lightning talks and mapping |
Various speakers |
| 16:00 – 16:45 |
Identify project areas for future funding applications |
All |
| 16:45 - 17:00 |
Wrap up and plans for next workshop |
|
Actions
- Create a presentation template for Single Voxel Group members, so as to showcase the brand consitently across presentations and maintain a uniform presence on the website.
Workshop 4
Date: Thursday 5 September, 2024
Location: Buttercup room, Wellbeing Hub, Southampton General Hospital [Location]
Agenda
| Time |
Topic |
Speaker |
Slides |
| 13:00 - 13:20 |
Recap |
Sofia Michopoulou |
| 13:20 - 14:00 |
Spatio-temporal modelling of disease progression |
Niranjan Mahesan |
|
| 14:00 - 14:40 |
Integration for data extraction and research data pipelines at the SETT centre |
Cai Davis |
| 14:40 - 15:10 |
Tea/coffee break |
| 15:10 - 16:00 |
BRAIID disease trajectories |
Dave Evenden |
| 16:00 - 16:05 |
Wrap up and plans for next meeting |
|
Actions
- Due to meeting overrun, roll over some of the talks not presented at this meeting to the next workshop.
- Invite additional members who would like to join.
- (Optional) Inherit the Single Voxel Group template for future presentations.
Workshop 5
Date: Thursday 5 December, 2024
Location: Room 7013, Building 100, Highfield Campus, University of Southampton [Map]
🎄 We aim to plan this meeting as a Christmas special in December at Highfield. 🎄
🎁 Please get in contact to introduce people who would like to join! 🎁
Agenda
Please feel free to suggest ideas for the agenda.
(Optional) Presentation Template: Please consider using the template here , to
showcase our brand consitently across presentations and help maintain
a uniform presence on our website.
| Time |
Topic |
Speaker |
Slides |
| 14:00 - 14:15 |
Introduction and 1st year overview for Single Voxel Group |
Sofia |
|
| 14:15 - 14:35 |
Data-driven causal model discovery and personalised prediction in Alzheimer's disease |
Pan |
| 14:35 - 15:15 |
Quantiative susceptibility mapping of iron in the brain |
Mobeen |
|
| 15:15 - 15:30 |
Tea/coffee break |
| 15:30 - 15:45 |
Overview of HOpE (Holistic Optical Biomarkers to Transform Dementia Diagnosis) project |
Chris |
| 15:45 - 16:30 |
NIHR imaging research group & BRC imaging in neuro and beyond |
Angela |
| 16:30 - 17:00 |
Wrap up, discussion of group direction and plan for next meeting |
All |
|
| 17:00 - late |
Drinks at the staff club |
Actions
- Gather thoughts from community on the future directions of the Single Voxel Group, to ensure the priorities and strategies align with the needs and aspirations of our community.
Workshop 6
Date: Thursday 6 March, 2025
Location: Dean's Committee Room (Level C), Southampton General Hospital [Directions]
Agenda
We aim to have short introductory teaching sessions for different imaging or data analysis techniques. Please feel free to suggest ideas for the agenda.
When preparing your presentation, please use our template here .
Virtual Attendance: We will have an option for virtual attendance. You would be able to hear the speakers and see the slides, but due to the limitations of the room's setup, attendees in the room may not be able to hear you.
| Time |
Topic |
Speaker |
Slides/Docs |
| 14:00 - 14:15 |
Recap |
Sofia Michopoulou |
| 14:15 - 14:45 |
Tutorial on brain SPECT imaging |
Sofia Michopoulou |
|
| 14:45 - 15:15 |
RoSignOL - robust signature of life or a ML approach on biomedical high throughput datasets |
Irina Mohorianu |
| 15:15 - 15:30 |
Tea/coffee Break |
|
| 15:30 - 16:00 |
Classification of Alzheimer’s disease in a large mixed clinical cohort using biofluid Raman spectroscopy |
George Devitt |
| 16:00 - 16:20 |
BRAIN AI wrap up (rolled over from previous meeting) |
Sofia Michopoulou |
| 16:20 - 16:50 |
Group discussion on BRC Candidate Research themes (see attached) |
All |
|
| 16:50 - 17:00 |
Wrap up and plans for next workshop |
All |
Actions
- Fill out the community survey to help guide the future directions for the Single Voxel Group.
Workshop 7
Date: Thursday 10 July, 2025
Location: Room 5011, Building 100, Highfield Campus, University of Southampton [Map]
Our next meeting will be on the 17th of June at 2pm in Building 100 at Highfield Campus at the University of Southampton.
If you are interested in presenting you research, or if you would like to provide a short tutorial to help understand the basics of the methods you use, please get in contact.
Agenda
| Time |
Topic |
Speaker |
Slides |
| 14:00 - 14:15 |
Introduction and discussion of community survey results |
Sofia Michopoulou |
|
| 14:15 - 14:45 |
Tutorial on Neuroimaging Data Formats: DICOM and NIfTI |
Yukai Zou |
|
| 14:45 - 15:00 |
Using explainable AI and amyloid PET to predict Alzheimer’s Disease |
Huw Morgan |
|
| 15:00 - 15:15 |
Using in-house vs commercial control databases for quantification of brain perfusion scans |
Tom Gee |
|
| 15:15 - 15:30 |
Tea/coffee break |
| 15:30 - 16:00 |
Digital Twins in Dementia |
Rahman Attar |
| 16:00 - 16:45 |
BRC Brain Health Theme and planning for future projects |
All |
| 16:45 - 17:00 |
Wrap up and plans for next workshop |
All |
| 17:00 - late |
Drinks at The Stag's |
Actions
- Fill out the community survey, to inform future plans of our group.
- Volunteer for tutorial for future workshops. Potential topics include: MRI, Raman, Machine learning.
- Consider having elected or rotating chair(s) for running the meetings.
- Invite members from BRC brain health shadow theme and from Psychiatry.
- Prepare draft projects for BRC healthy brain shadow theme.
Workshop 8
Date: Tuesday 7 October, 2025
Location: Seminar Room 2, Heartbeat Education Centre (Level F), Southampton General Hospital [Directions - Main Entrance][Directions - North Wing]
Agenda
| Time |
Topic |
Speaker |
Slides |
| 14:00 - 14:10 |
Introductions and review of last meeting |
Sofia Michopoulou |
|
| 14:10 - 14:50 |
Good Vibrations Tutorial on Raman Spectroscopy |
Sumeet Mahajan |
| 14:50 - 15:30 |
Reliable and uncertainty-aware predictions using Conformal Predictors |
Neri Riqueleme Granada |
| 15:30 - 15:45 |
Tea/coffee break |
| 15:45 - 16:05 |
From Raw Spectra to Reliable Predictions Using Machine Learning |
Sharon Sunny |
| 16:05 - 16:25 |
3D Semiparametric Spatial Autoregressive Model Applied to Blood-Brain Barrier Analysis (Not presented, will be rolled over to next meeting) |
Jinxuan Bai |
| 16:25 - 16:45 |
Systematic Review for AI in Amyloid PET: Setting up a working Group (Not presented, will be rolled over to next meeting) |
Sofia Michopoulou |
| 16:45 - 17:00 |
Wrap up and plans for next workshop |
All |
|
Actions
- Explore setting up an Amyloid PET working group.
- Explore participation in the GNPC challenge.
- Plan the next meeting (early January at UoS) with the following agenda items:
- Tutorial session (potentially on AI/ML by Niranjan)
- Presentations postponed from this meeting (Jinxuan and Sofia)
- Presentation from Pan (TBC)
Workshop 9
Date: Tuesday 10 February, 2026
Location: Room 8011, Building 100, Highfield Campus, University of Southampton [Map]
Please feel free to get in contact if you are interested in presenting or have a project idea or question you’d like to discuss with our group.
Agenda
| Time |
Topic |
Speaker |
Slides |
| 14:00 - 14:10 |
Introductions and review of last meeting |
Sofia Michopoulou |
|
| 14:10 - 14:50 |
Machine Learning with a Smile |
Niranjan Mahesan |
|
| 14:50 - 15:20 |
An Introduction to the UK Biobank Pandora MRI Resource with an Imaging Genetics Application in Neurodegeneration |
Chris Long |
| 15:20 - 15:50 |
Break |
| 15:50 - 16:10 |
3D Semiparametric Spatial Autoregressive Model Applied to Blood-Brain Barrier Analysis |
Jinxuan Bai |
| 16:10 - 16:30 |
Assessing feasibility of fMRI for imaging CSF flow |
Emmanuel Ogunsakin |
|
| 16:30 - 16:45 |
First steps of Systematic Review for AI in Amyloid PET (Not presented, will be rolled over to next meeting) |
Working Group |
| 16:45 - 17:00 |
Wrap up and plans for next workshop |
All |
|
Actions
Plan the next meeting with the following agenda items:
- Presentation postponed from this meeting (Amyloid PET working group update).
- Continue inviting volunteers to form a small working group to help maintain the website.
- Gradually migrate Single Voxel Group materials to the Open Science Framework Repository [Link], for longer term access and maintenance.
Workshop 10
Date: TBC
Location: TBC
Please feel free to get in contact if you are interested in presenting or have a project idea or question you’d like to discuss with our group.
Agenda
To be added.